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["Table S11 DEGs related to trichomes in six RNA-Seq data"]
["#ID","L01","L02","L03","L04","L05","L06","KOG_class","KOG_class_annotation","Swiss-Prot_annotation","eggNOG_class","eggNOG_class_annotation","NR_annotation"]
["Cotton_newGene_24966",0.606186,0.560111,0.331541,0.339301,0.489518,0.302692,"--","--","Protein trichome berefringence-like 7 GN=TBL7 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","Transcription factor ORG3 -like protein [Gossypium arboreum]"]
["Cotton_newGene_44106",3.063549,2.737826,1.418903,0.381188,0.086405,3.528949,"--","--","Protein trichome birefringence GN=TBR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Emb:CAB82953.1, putative [Theobroma cacao] "]
["Cotton_newGene_9899",1.753018,0.950622,0.209696,0.043654,0.95865,0.098658,"--","--","Protein trichome birefringence-like 39 GN=TBL39 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Trichome birefringence-like 39 [Theobroma cacao] "]
["evm.TU.Gh_A01G1131",0.465864,0.848147,1.053866,0.213058,0.945489,0.48391,"--","--","Protein trichome birefringence GN=TBR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","CAS1 domain-containing 1 [Gossypium arboreum]"]
["evm.TU.Gh_A01G1615",6.186814,3.803033,1.693188,5.394011,5.487387,3.586687,"--","--","Protein trichome birefringence GN=TBR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Emb:CAB82953.1, putative [Theobroma cacao] "]
["evm.TU.Gh_A02G0286",1.050228,0.509136,0.607694,0.396394,1.501818,0.442063,"--","--","Protein trichome birefringence-like 10 GN=TBL10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Trichome birefringence-like 11 isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A02G1753",1.767049,1.724229,1.286094,1.062755,1.716572,0.814156,"--","--","Protein trichome birefringence-like 23 GN=TBL23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Elongation factor 4 [Gossypium arboreum]"]
["evm.TU.Gh_A05G2788",1.40805,0.71227,1.389936,1.733634,1.060448,0.502986,"--","--","Protein ALTERED XYLOGLUCAN 4 GN=F20P5.5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Trichome birefringence-like 27 [Theobroma cacao] "]
["evm.TU.Gh_A05G3316",0.576862,0.422966,0.594309,0.366206,0.491632,0.244931,"--","--","Protein trichome birefringence-like 14 GN=TBL14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","CAS1 domain-containing 1 [Gossypium arboreum]"]
["evm.TU.Gh_A06G1401",0.465012,0.409147,0.132772,0.248613,0.911654,0.165739,"--","--","Protein trichome birefringence-like 38 GN=TBL38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","putative C7orf58 [Gossypium arboreum]"]
["evm.TU.Gh_A06G1828",3.389305,4.138556,1.508848,0.411621,3.183136,0.068964,"--","--","Protein trichome birefringence-like 38 GN=TBL38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Trichome birefringence-like 37 isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A10G0290",3.711313,1.907663,2.463505,4.687376,8.654087,10.027601,"--","--","Protein trichome birefringence-like 38 GN=TBL38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Enolase [Gossypium arboreum]"]
["evm.TU.Gh_A10G1369",1.48035,0.780971,0.316223,0.497676,0.913812,0.187046,"--","--","Protein trichome birefringence-like 39 GN=TBL39 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Trichome birefringence-like 39 [Theobroma cacao] "]
["evm.TU.Gh_A10G1635",2.670191,2.00359,1.377562,1.254765,1.406446,0.829516,"--","--","Protein trichome birefringence GN=TBR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","CAS1 domain-containing 1 [Gossypium arboreum]"]
["evm.TU.Gh_A11G1118",1.239723,0.653308,0.546867,0.672056,1.01162,0.126668,"--","--","Protein trichome birefringence-like 11 GN=TBL11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Trichome birefringence-like 11 isoform 2 [Theobroma cacao] "]
["evm.TU.Gh_A11G1554",1.399337,1.911288,0.860082,0.554984,0.420479,0.458407,"--","--","Protein trichome birefringence-like 19 GN=TBL19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","putative C7orf58 [Gossypium arboreum]"]
["evm.TU.Gh_A12G0014",1.331326,0.936906,0.154699,0.328822,0.532191,0.791634,"--","--","Protein trichome birefringence-like 6 GN=TBL6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","putative U95 [Gossypium arboreum]"]
["evm.TU.Gh_A12G0031",1.778333,1.787928,0.866679,1.57286,1.487448,1.012169,"--","--","Protein trichome birefringence-like 10 GN=TBL10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Trichome birefringence-like 11 isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A12G0999",1.263855,0.611648,0.066731,1.056278,0.789277,0.573232,"--","--","Protein trichome birefringence-like 25 GN=TBL25 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Poly (U)-specific endoribonuclease [Gossypium arboreum]"]
["evm.TU.Gh_A12G1127",1.449365,1.639776,1.256024,0.95686,2.144821,0.784349,"--","--","Protein trichome birefringence-like 6 GN=TBL6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Trichome birefringence-like 6 [Theobroma cacao] "]
["evm.TU.Gh_A12G2176",1.029517,0.569987,0.84361,1.08134,1.765989,0.625847,"--","--","Protein BRANCHLESS TRICHOME GN=BLT OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Branchless trichome [Theobroma cacao] "]
["evm.TU.Gh_A12G2389",0.525224,0.543138,0.30157,0.44261,0.791398,0.525261,"--","--","Protein trichome birefringence-like 18 GN=TBL18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Trichome birefringence-like 18 isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A13G0088",1.498152,0.633864,0.854657,0.58193,1.569415,0.913925,"--","--","Protein trichome birefringence-like 36 GN=TBL36 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Trichome birefringence-like 36 [Theobroma cacao] "]
["evm.TU.Gh_A13G0130",0.277753,0.087709,0.377354,0.24001,0.349986,0.052406,"--","--","Protein trichome birefringence-like 33 GN=TBL33 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","putative C7orf58 [Gossypium arboreum]"]
["evm.TU.Gh_A13G1295",2.907178,1.091155,0.482058,3.199571,1.50214,1.012803,"--","--","Protein trichome birefringence-like 41 GN=TBL41 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","CAS1 domain-containing 1 [Gossypium arboreum]"]
["evm.TU.Gh_A13G2307",0.53435,1.220531,0.408673,0.088192,0.460735,0.223648,"--","--","Protein trichome birefringence-like 5 GN=TBL5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Pyridoxal-phosphate-dependent serine hydroxymethyltransferase [Gossypium arboreum]"]
["evm.TU.Gh_D01G1218",0.395392,0.210208,0.138489,0.091053,0.245782,0,"--","--","Protein trichome birefringence GN=TBR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","CAS1 domain-containing 1 [Gossypium arboreum]"]
["evm.TU.Gh_D01G1744",0.688714,0.687682,0.391507,0.233516,0.809163,0.574371,"--","--","Protein trichome birefringence-like 12 GN=TBL12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Gb:AAD15463.1 isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D01G1845",4.163736,2.559338,1.272283,2.068253,3.091315,1.576307,"--","--","Protein trichome birefringence GN=TBR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Emb:CAB82953.1, putative [Theobroma cacao] "]
["evm.TU.Gh_D02G0351",1.842051,1.07575,1.753945,1.257946,3.125033,2.073745,"--","--","Protein trichome birefringence-like 10 GN=TBL10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Trichome birefringence-like 11 isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D03G0730",1.315126,1.814211,0.779441,0.248882,0.632753,0.402524,"--","--","Protein trichome birefringence-like 23 GN=TBL23 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Elongation factor 4 [Gossypium arboreum]"]
["evm.TU.Gh_D04G1311",0.459116,0.78005,0.077725,0.346095,0.937939,1.360784,"--","--","Protein trichome birefringence-like 35 GN=TBL35 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","CAS1 domain-containing 1 [Gossypium arboreum]"]
["evm.TU.Gh_D04G1704",1.357678,1.766306,1.240971,0.986642,1.612901,0.821447,"--","--","Protein trichome birefringence-like 13 GN=TBL13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Protein ROS1 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_D06G1745",2.126054,0.875474,0.750243,0.796514,0.873447,0.266649,"--","--","Protein trichome birefringence-like 38 GN=TBL38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","putative C7orf58 [Gossypium arboreum]"]
["evm.TU.Gh_D06G1766",0.970017,0.758748,0.388882,0.272916,0.737531,0.361134,"--","--","Protein trichome birefringence-like 33 GN=TBL33 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","putative C7orf58 [Gossypium arboreum]"]
["evm.TU.Gh_D06G2148",2.23621,2.017789,2.387913,0.713249,2.139135,0.342885,"--","--","Protein trichome birefringence-like 38 GN=TBL38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Trichome birefringence-like 37 isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D07G0399",0.624882,0.474252,0.674312,0.451048,0.32221,0.246271,"--","--","Protein trichome birefringence-like 18 GN=TBL18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Trichome birefringence-like 18 isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D08G0216",1.130029,1.364682,0.983056,0.380424,0.927144,0.608822,"--","--","Protein trichome birefringence-like 5 GN=TBL5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","CAS1 domain-containing 1 [Gossypium arboreum]"]
["evm.TU.Gh_D10G0293",3.422655,1.380722,1.83256,3.854466,5.809576,6.133446,"--","--","Protein trichome birefringence-like 38 GN=TBL38 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Enolase [Gossypium arboreum]"]
["evm.TU.Gh_D10G1101",4.787502,2.445655,0.836201,1.437957,3.150601,0.716725,"--","--","Protein trichome birefringence-like 39 GN=TBL39 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Trichome birefringence-like 39 [Theobroma cacao] "]
["evm.TU.Gh_D10G1890",1.04501,1.549,1.516158,0.475501,0.76341,0.601807,"--","--","Protein trichome birefringence GN=TBR OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","CAS1 domain-containing 1 [Gossypium arboreum]"]
["evm.TU.Gh_D10G2389",3.419137,1.312662,1.109062,3.110121,2.712556,3.192843,"--","--","Protein trichome birefringence-like 33 GN=TBL33 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","CAS1 domain-containing 1 [Gossypium arboreum]"]
["evm.TU.Gh_D11G1269",1.075739,0.467434,0.151475,0.843178,0.515276,0.14277,"--","--","Protein trichome birefringence-like 11 GN=TBL11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Trichome birefringence-like 11 isoform 2 [Theobroma cacao] "]
["evm.TU.Gh_D11G1708",10.322622,9.540225,5.162723,10.263273,7.23442,2.703374,"--","--","Protein trichome birefringence-like 19 GN=TBL19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","putative C7orf58 [Gossypium arboreum]"]
["evm.TU.Gh_D11G1709",1.351766,2.077442,1.329883,0.545998,0.914571,0.957167,"--","--","Protein trichome birefringence-like 19 GN=TBL19 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","S","Function unknown","putative C7orf58 [Gossypium arboreum]"]
["evm.TU.Gh_D12G0015",0.380918,0.517468,0.056578,0.262222,0.143966,0.253839,"--","--","Protein trichome birefringence-like 6 GN=TBL6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","putative U95 [Gossypium arboreum]"]
["evm.TU.Gh_D12G0046",1.14099,0.81903,0.429405,0.634391,0.912558,0.293548,"--","--","Protein trichome birefringence-like 10 GN=TBL10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Trichome birefringence-like 11 isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D12G1118",2.572294,1.13641,0.66009,1.58853,1.393001,0.680254,"--","--","Protein trichome birefringence-like 25 GN=TBL25 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Poly (U)-specific endoribonuclease [Gossypium arboreum]"]
["evm.TU.Gh_D12G1256",0.805667,0.691167,0.898841,0.416144,0.850216,0.373778,"--","--","Protein trichome birefringence-like 6 GN=TBL6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Trichome birefringence-like 6 [Theobroma cacao] "]
["evm.TU.Gh_D12G2355",0.750376,0.948278,0.687239,0.546055,1.189618,0.429505,"--","--","Protein BRANCHLESS TRICHOME GN=BLT OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","S","Function unknown","Branchless trichome [Theobroma cacao] "]
["evm.TU.Gh_D13G1921",0.434758,0.397473,0.296471,0.094283,0.551736,0.137082,"--","--","Protein trichome birefringence-like 5 GN=TBL5 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","S","Function unknown","Pyridoxal-phosphate-dependent serine hydroxymethyltransferase [Gossypium arboreum]"]